`thetaAligned.Rd`

Align topic proportions in specimens across chain.

thetaAligned(theta, K, aligned, iterUse = 1000, chain = 4)

theta | array. three dimensional array (iterations * topic * specimens). |
---|---|

K | integer. number of topics. |

aligned | aligned matrix. A matrix of topic assignment for each chain. output of alignmentMatrix. |

iterUse | integer. number of iterations used in each chain after subtracting warm-up samples. |

chain | integer. number of chains used in MCMC. |

array. three dimensional array.