Align topic proportions in specimens across chain.

Align topic proportions in specimens across chain.

thetaAligned(theta, K, aligned, iterUse = 1000, chain = 4)

Arguments

theta

array. three dimensional array (iterations * topic * specimens).
K

integer. number of topics.
aligned

aligned matrix. A matrix of topic assignment for each chain. output of alignmentMatrix.
iterUse

integer. number of iterations used in each chain after subtracting warm-up samples.
chain

integer. number of chains used in MCMC.

Value

array. three dimensional array.