diagnosticsPlot.RdDiagnostics plots - ESS and Rhat.
diagnosticsPlot(theta_aligned, beta_aligned, iterUse = 1000, chain = 4)
| theta_aligned | array. Three dimensional array returned by thetaAligned(). |
|---|---|
| beta_aligned | array. Three dimensional array returned by betaAligned(). |
| iterUse | integer. number of iterations used in each chain after subtracting warm-up samples. |
| chain | integer. number of chains used in MCMC. |
list. ggplots of effective sample size and rhat plots.