Container

Microbiome multi-omics includes maker-gene sequencing, metagenomics, metatranscriptomics, metabolomics, and cytokines. A container build from SummarizeExperiment class in Bioconductor can facilitate microbiome multi-omics integrative approaches.

Transformation

Transformation and imputation methods are needed to explore microbiome multi-omics.

Metatranscriptomics and marker-gene integration

Vaginal microbiome data

Integrative human microbiome project