Plots the PACF given the multiple taxa indices.

Plots the PACF given the multiple taxa indices.

longPACFMultiple(pstr, main_factor, time_var, starttaxa = 1,
  endtaxa = 4, taxlevel = "Species", lag.max = 10)

Arguments

pstr	(Required). A phyloseq-class. The arcsinh transformation of the otu table.
main_factor	Character string. The name of the variable to map main factor in the plot (factor vector).
time_var	Character string. The name of the variable to map time in the plot (integer vector).
starttaxa	Numeric. The first index of taxa ordered by total reads
endtaxa	Numeric. The last index of taxa ordered by total reads
taxlevel	Character string. The taxonomy level for the plot title.
lag.max	Numeric. The maximum lags that PACF to be computed.

Value

ggplot2-class object of PACF for multiple taxa.