bootLongSubsampling.RdFinding optimal block size.
bootLongSubsampling(ps, main_factor, time_var, subjectID_var, sampleID_var, lI, R, RR, omega = 0.6, lC1 = 1, lC2 = NULL, ncores, psi.hat.lI = FALSE, psi.hat.lI.val = NULL, compStatParallel = FALSE)
| ps | phyloseq object. |
|---|---|
| main_factor | Character string. The name of the covariate variable. |
| time_var | Character string. The name of the time variable. |
| subjectID_var | Character string. The name of the subject ID variable. |
| sampleID_var | Character string. The name of the sample ID variable. |
| lI | A numeric. The initial block size. |
| R | A numeric. The number of block bootstrap realizations. |
| RR | A numeric. The number of double block bootstrap realizations. |
| omega | A numeric. The proportion between 0 and 1 of repeated observations for subsampling. |
| lC1 | A numeric. (optional) any block size to start with. Defualt is 1. |
| lC2 | A numeric. (optional) any block size to end with. defualt is (lI-1). |
| ncores | A numeric. The number of cores to use in |
| psi.hat.lI | A logical. psi is estiamted already with the initial block size. |
| psi.hat.lI.val | A list. If psi is calculated already, give the list of values. |
| compStatParallel | A logical. True is used to use parallel in |
A list of ``MSE`` in calculating K with block sizes lC=1:(lI-1), ``Khat`` values with block sizes lC=1:(lI-1) and ``Khat.obs`` with lI