bootLongMSEPsi

Compute MSE in computing \(\psi\) = two-sided probability with different block sizes.

bootLongMSEPsi(ps, main_factor, time_var, subjectID_var, sampleID_var, b,
  R, RR, qj, Wj, Khat.obs = NULL, T.obs.full = NULL, ncores,
  compStatParallel = FALSE)

Arguments

ps

phyloseq object.
main_factor

Character string. The name of the covariate variable.
time_var

Character string. The name of the time variable.
subjectID_var

Character string. The name of the subject ID variable.
sampleID_var

Character string. The name of the sample ID variable.
b

A numeric. The block size to account for the dependence within-subject.
R

A numeric. The number of block bootstrap realizations.
RR

A numeric. The number of double block bootstrap realizations.
qj

A numeric vector. The number of repeated observations for j-th subject.
Wj

A numeric vector. The number of repeated observations in the subset for j-th subject
Khat.obs

A numeric vector. The second element of the output of bootLongPsi evaluated using the initial block size and full data.
T.obs.full

A numeric vector. The numeric vector of observed statistic.
ncores

A numeric. The number of cores to use in mclapply.
compStatParallel

A logical. True is used to use parallel in computeStat and disable parallel in bootLongPsi or bootLongMethod.

Value

A list of MSE computed with given block size b, Khat with all subsamples, Khat with initial block size.