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Reference
Articles
Section 1: INTRODUCTION
Section 2: MICROBIOME DATA
Section 3: EXAMPLE OF 16S rRNA GENE SEQUENCING DATA
Section 4: MODELS
Section 5: TRANSFORMATIONS
Section 6: VISUALIZATIONS FOR HETEROGENEOUS DATA
Section 7: MULTIVARIATE AND NETWORK ANALYSES
Section 8: DIFFERENTIAL ABUNDANCE ANALYSIS
Section 9: LATENT DIRICHLET ALLOCATION
Section 10: UNCERTAINTY QUANTIFICATION FOR ORDINATION ANALYSIS
Compute the median Bayesian posterior of topic proportions in each sample, multiply the proportions by the library size and round to an integer, and use this as the abundance of the topics in each sample to test differentially abundant topics.
License
LGPL (>= 3)
Developers
Pratheepa Jeganathan
Author, maintainer
Susan Holmes
Author, contributor